PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g042319m
Common NameCISIN_1g042319mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 394aa    MW: 44542.4 Da    PI: 7.2651
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g042319mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-1570129155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  orange1.1g042319m  70 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDEEEAAARAYDLAALKYWG 129
                        789******************888855555447*************************98 PP

2AP252.41.3e-16172223155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  orange1.1g042319m 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 223
                        89****99**********99966...3.6*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1670139IPR016177DNA-binding domain
PfamPF008472.2E-1270129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1571138IPR001471AP2/ERF domain
SMARTSM003804.4E-2571143IPR001471AP2/ERF domain
PROSITE profilePS5103219.69171137IPR001471AP2/ERF domain
PRINTSPR003672.8E-57283IPR001471AP2/ERF domain
CDDcd000186.64E-25172233No hitNo description
SuperFamilySSF541716.47E-18172233IPR016177DNA-binding domain
PfamPF008474.9E-12172223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18173232IPR001471AP2/ERF domain
SMARTSM003801.6E-26173237IPR001471AP2/ERF domain
PROSITE profilePS5103218.953173231IPR001471AP2/ERF domain
PRINTSPR003672.8E-5213233IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEMMMVKQEE TQGRRRALVV VDGEVQSARC VKRRRRDPAV TSLGCDDNQS QQQQNDHISG  60
AAATTVKRSS RFRGVSRHRW TGRYEAHLWD KLSWNVTQKK KGKQVYLGAY DEEEAAARAY  120
DLAALKYWGT STFTNFPISD YEKEIEFMQT VTKEEYLASL RRKSSGFSRG VSKYRGVARH  180
HHNGRWEARI GRVFGNKYLY LGTYSTQEEA ARAYDIAAIE YRGINAVTNF DLSSYIRWLK  240
PGTNNILTAG HELPTLTEPQ SVLPSPTDFS PREEPKYLLF QSNPITADFL NSPQKQEDCF  300
QSNVSVNSGN NNNKPSTPSA LGLLLRSSIF KELVEKNSNV SEDESEGDEK KNQHGTACDD  360
EFGGIFYDGI ADFPFICSSN GGSIDFQERE HFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11335RRRALVVVDGEVQSARCVKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482670.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y61e-92WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A067GAR80.0A0A067GAR8_CITSI; Uncharacterized protein
STRINGPOPTR_0017s11470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-81AP2 family protein